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Bronikowski, A. M., Meisel, R. P., Biga, P. R., Walters, J. R., Mank, J. E., Larschan, E., Wilkinson, G. S., Valenzuela, N., Conard, A. M., de Magalhaes, J. P., Duan, J. E., Elias, A. E., Gamble, T., Graze, R. M., Gribble, K. E., Kreiling, J. A., & Riddle, N. C. (2022). Sex-specific aging in animals: Perspective and future directions. Aging Cell, 21(2).

Chaouni, B., Idrissi Azami, A., Essayeh, S., Arrafiqui, E., Bailal, A., Raoui, S., Amzazi, S., Twaddle, A., El Hamouti, C., Boukhatem, N., Timinouni, M., El Otmani, F., Chahboune, R., Barrijal, S., El Homani, A., Nejjari, C., Zaid, E., Hamamouch, N., Bakkali, F., Amaral-Zettler, L., … Ghazal, H. (2022). Moroccan Lagoon Microbiomes. Water, 14(11), 1715.

Chitale, P., Lemenze, A., Fogarty, E., Shah, A., Grady, C., Odom-Mabey, A., Johnson, W., Yang, J., Eren, A., Brosch, R., Kumar, P., & Alland, D. (2022). A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome. Nature Communications, 13(1), 7068.

Crognale, S., Venturi, S., Tassi, F., Simona, R., Cabassi, J., Capecchiacci, F., Bicocchi, G., Vaselli, O., Morrison, H., Sogin, M., & Fazi, S. (2022). Geochemical and microbiological profiles in hydrothermal extreme acidic environments (Pisciarelli Spring, Campi Flegrei, Italy). FEMS Microbiology Ecology.

Darras, H., De Souza Araujo, N., Baudry, L., Guiglielmoni, N., Lorite, P., Marbouty, M., Rodriguez, F., Arkhipova, I., Koszul, R., Flot, J.-F., & Aron, S. (2022). Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: Stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants. Peer Community Journal, 2.

Delmont, T., Gaia, M., Hinsinger, D., Frémont, P., Vanni, C., Fernandez-Guerra, A., Eren, A., Kourlaiev, A., d’Agata, L., Clayssen, Q., Villar, E., Labadie, K., Cruaud, C., Poulain, J., Da Silva, C., Wessner, M., Noel, B., Aury, J.-M., Coordinators, T., … Jaillon, O. (2022). Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean. Cell Genomics, 2(5), 100123.

Delmont, T. O., Karlusich, J. J. P., Veseli, I., Fuessel, J., Eren, A. M., Foster, R. A., Bowler, C., Wincker, P., & Pelletier, E. (2022). Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean. Isme Journal, 16(4), 927–936.

Delmont, T. O., Pierella Karlusich, J. J., Veseli, I., Fuessel, J., Eren, A. M., Foster, R. A., Bowler, C., Wincker, P., & Pelletier, E. (2022). Correction to: Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean. The ISME Journal, 16(4), 1203–1203.

Gillis, J., Bennett, S., Criswell, K., Rees, J., Sleight, V., Hirschberger, C., Calzarette, D., Kerr, S., & Dasen, J. (2022). Big insight from the little skate: Leucoraja erinacea as a developmental model system. In Emerging Model Systems in Developmental Biology (Vol. 147, pp. 595–630). Elsevier. .

Hirschberger, C., & Gillis, J. A. (2022). The pseudobranch of jawed vertebrates is a mandibular arch-derived gill. Development, 149(13).

Klasek, S. A., Brock, M. T., Calder, W. J., Morrison, H. G., Weinig, C., & Maïgnien, L. (2022). Spatiotemporal Heterogeneity and Intragenus Variability in Rhizobacterial Associations with Brassica rapa Growth. mSystems, 0(0), e00060-22.

Kumar, A., Kerr, L., Shribak, M., Oldenbourg, R., & Patel, N. (2022). Reflecting on the Past and Building the Future of Imaging at ��Ůֱ������: Carrying Forward Shinya Inoué’s Legacy. Microscopy and Microanalysis, 28(S1), 1554–1556.

Lebeaux, R. M., Madan, J. C., Nguyen, Q. P., Coker, M. O., Dade, E. F., Moroishi, Y., Palys, T. J., Ross, B. D., Pettigrew, M. M., Morrison, H. G., Karagas, M. R., & Hoen, A. G. (2022). Impact of antibiotics on off-target infant gut microbiota and resistance genes in cohort studies. Pediatric Research, 1–10.

Matute, J., Duan, J., Flak, M., Griebel, P., Tascon-Arcila, J., Doms, S., Hanley, T., Antanaviciute, A., Gundrum, J., Welch, J., Sit, B., Abtahi, S., Fuhler, G., Grootjans, J., Tran, F., Stengel, S., White, J., Krupka, N., Haller, D., … Blumberg, R. (2022). Intelectin-1 binds and alters the localization of the mucus barrier–modifying bacterium Akkermansia muciniphila. Journal of Experimental Medicine, 220(1), e20211938.

McLean, A., Torres‐Morales, J., Dewhirst, F., Borisy, G., & Welch, J. (2022). Site‐tropism of streptococci in the oral microbiome. Molecular Oral Microbiology.

Miranda, K., Weigel, B., Fogarty, E., Veseli, I., Giblin, A., Eren, A., & Pfister, C. (2022). The Diversity and Functional Capacity of Microbes Associated with Coastal Macrophytes. mSystems, e0059222.

Moran, M. A., Kujawinski, E. B., Schroer, W. F., Amin, S. A., Bates, N. R., Bertrand, E. M., Braakman, R., Brown, C. T., Covert, M. W., Doney, S. C., Dyhrman, S. T., Edison, A. S., Eren, A. M., Levine, N. M., Li, L., Ross, A. C., Saito, M. A., Santoro, A. E., Segre, D., … Vardi, A. (2022). Microbial metabolites in the marine carbon cycle. Nature Microbiology, 7(4), 508–523.

Morillo-Lopez, V., Sjaarda, A., Islam, I., Borisy, G., & Mark Welch, J. (2022). Corncob structures in dental plaque reveal microhabitat taxon specificity. Microbiome, 10(1).

Moroishi, Y., Gui, J., Hoen, A., Morrison, H., Baker, E., Nadeau, K., Li, H., Li, Z., Madan, J., & Karagas, M. (2022). The relationship between the gut microbiome and the risk of respiratory infections among newborns. Communications Medicine, 2(1), 87.

Moroishi, Y., Gui, J., Nadeau, K. C., Morrison, H. G., Madan, J., & Karagas, M. R. (2022). A prospective study of the infant gut microbiome in relation to vaccine response. Pediatric Research.

Niu, M., Deng, L., Su, L., Ruff, S., Yang, N., Luo, M., Qi, Q., Li, J., & Wang, F. (2022). Methane supply drives prokaryotic community assembly and network at cold seeps of the South China Sea. Molecular Ecology.

Paul, B. G., & Eren, A. M. (2022). Eco-evolutionary significance of domesticated retroelements in microbial genomes. Mobile DNA, 13(1), 6.

Paul, B., Yushenova, I., & Arkhipova, I. (2022). The Diversity of Reverse Transcriptases. In Retrotransposons and Human Disease (pp. 1–28).

Ramirez-Puebla, S. T., Weigel, B. L., Jack, L., Schlundt, C., Pfister, C. A., & Welch, J. L. M. (2022). Spatial organization of the kelp microbiome at micron scales. Microbiome, 10(1), 52.

Richter, N., Russell, J. M., Amaral-Zettler, L., DeGroff, W., Raposeiro, P. M., Goncalves, V., de Boer, E. J., Pla-Rabes, S., Hernandez, A., Benavente, M., Ritter, C., Saez, A., Bao, R., Trigo, R. M., Prego, R., & Giralt, S. (2022). Long-term hydroclimate variability in the sub-tropical North Atlantic and anthropogenic impacts on lake ecosystems: A case study from Flores Island, the Azores. Quaternary Science Reviews, 285.

Rinaldi, G., Attenborough, T., Rawlinson, K., & Berriman, M. (2022). Schistosomes go single cell. Nature Reviews Microbiology, 20(12), 705–705.

Rodriguez, F., & Arkhipova, I. (2022). An overview of best practices for transposable element identification, classification, and annotation in eukaryotic genomes. In Transposable Elements (Vol. 2607, pp. 1–23). Humana Press.

Rodriguez, F., Yushenova, I. A., DiCorpo, D., & Arkhipova, I. R. (2022). Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA. Nature Communications, 13(1).

Roguet, A., Newton, R., Eren, A., & McLellan, S. (2022). Guts of the urban ecosystem: Microbial ecology of sewer infrastructure. mSystems, e00118–e00122.

Ruff, S. E. (2022). Editorial: Microbial Communities and Metabolisms Involved in the Degradation of Cellular and Extracellular Organic Biopolymers. Frontiers in Microbiology, 12, 802619.

Smith, J. J., Kenny, I. W., Wolff, C., Cray, R., Kumar, A., Sherwood, D. R., & Matus, D. Q. (2022). A light sheet fluorescence microscopy protocol for Caenorhabditis elegans larvae and adults. Frontiers in Cell and Developmental Biology, 10.

Thiruppathy, M., Fabian, P., Gillis, J. A., & Crump, J. G. (2022). Gill developmental program in the teleost mandibular arch. eLIFE, 11.

Trigodet, F., Lolans, K., Fogarty, E., Shaiber, A., Morrison, H. G., Barreiro, L., Jabri, B., & Eren, A. M. (2022). High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes. Molecular Ecology Resources, 22(5), 1786–1802.

Vanni, C., Schechter, M. S., Acinas, S. G., Barberan, A., Buttigieg, P. L., Casamayor, E. O., Delmont, T. O., Duarte, C. M., Eren, A. M., Finn, R. D., Kottmann, R., Mitchell, A., Sanchez, P., Siren, K., Steinegger, M., Gloeckner, F. O., & Fernandez-Guerra, A. (2022). Unifying the known and unknown microbial coding sequence space. eLIFE, 11.

Zhang, W., Foo, M., Eren, A. M., & Pan, T. (2022). tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes. Molecular Cell, 82(5), 891–906.

Zhao, S., Zettler, E., Bos, R., Lin, P., Amaral-Zettler, L., & Mincer, T. (2022). Large quantities of small microplastics permeate the surface ocean to abyssal depths in the South Atlantic Gyre. Global Change Biology, 28(9), 2991–3006.